Let’s be honest, a lot of muffins are basically just cupcakes without the frosting.
They can be full of sugar and don’t always make the best breakfast.
But what if a muffin could be both delicious AND healthy?
A muffin that’s easy to make, perfect for grabbing on your way out the door, and actually tastes REALLY good.
That’s where this list comes in.
I’ve put together 28 of the best healthy muffin recipes so you can feel great about what you’re baking.
There’s something here for everyone, from super simple recipes to more unique flavor ideas.
So whether you need a quick breakfast or a smarter snack, you’ll find the perfect recipe below.
1. Vegan Banana Oatmeal Muffins with Chocolate Chips
These vegan banana oatmeal muffins with chocolate chips are a comforting, wholesome treat that’s easy to make and hard to resist.
Packed with ripe banana, hearty oats, and sweet chocolate chips, they’re perfect for breakfast or a satisfying snack.
2. Applesauce Oatmeal Muffins Recipe
These apple cinnamon oat muffins are a cozy treat made with simple, wholesome ingredients.
Perfect for breakfast or a quick snack, they’re easy to enjoy any time of day.
3. Vegan Banana Blueberry Muffins
These vegan banana blueberry muffins are soft, sweet, and full of natural flavor. Made with whole wheat flour and bursting with ripe bananas and blueberries, they’re a healthy treat any time of day.
4. Blueberry Lemon Cornmeal Muffins
These blueberry lemon cornmeal muffins are a wholesome twist on a classic—you’ll love their soft crumb and bright citrus flavor. Perfectly sweet, dairy-free, and made with simple ingredients, they’re great for breakfast or a quick snack.
5. Keto Chocolate Chip Muffins
These Keto Chocolate Chip Muffins are a dream for anyone craving something sweet without the carbs.
Perfect for breakfast, a quick snack, or a chocolate fix any time of day.
6. Easy Almond Flour Rhubarb Muffins Recipe
These easy almond flour rhubarb muffins are a delicious, gluten-free treat that’s perfect for a healthy breakfast or snack. Packed with naturally sweet rhubarb and made with simple ingredients, they’re low-carb and ready in no time.
7. Vegan Zucchini Muffins with Flax and Walnuts
These vegan zucchini muffins are soft, flavorful, and packed with flax and walnuts for a satisfying bite.
Perfect for mornings or anytime you need a simple, wholesome treat.
8. 3 Ingredient Banana Oatmeal Muffins (vegan)
These 3 Ingredient Banana Oatmeal Muffins are a quick, cozy treat made with just banana, oats, and plant-based milk.
Perfect for breakfast or a snack, they’re naturally sweet, fluffy, and easy to make without any fuss.
9. Banana Blueberry Oatmeal Muffins
These banana blueberry oatmeal muffins are a delicious, healthy treat that everyone can enjoy. Packed with ripe bananas, juicy blueberries, and a touch of yogurt, they’re naturally sweet, gluten free, and perfect for breakfast or a toddler snack.
10. Keto Pumpkin Muffins
Warm, moist, and perfect for a quick breakfast or satisfying snack, these keto pumpkin muffins are a must-try.
Enjoy a deliciously low carb, sugar free treat that’s gluten free and dairy free—great for any time of day.
11. Coconut Flour Blueberry Muffins
These Coconut Flour Blueberry Muffins are soft, sweet, and packed with fresh blueberries—perfect for a quick breakfast. Naturally dairy free, gluten free, and low carb, they’re a tasty treat that fits a healthy lifestyle without missing a beat.
12. Healthy Oatmeal Muffins (Gluten Free)
These Healthy Oatmeal Muffins (Gluten Free) are a delicious way to start your day with a boost of fiber and energy.
Packed with oats, natural sweetness, and wholesome ingredients, they’re easy to enjoy anytime—perfect for busy mornings or a quick snack.
13. Almond Flour Chocolate Chip Muffins
These Almond Flour Chocolate Chip Muffins are a delicious gluten free treat that everyone can enjoy.
Packed with rich chocolate chips and made with simple, low carb ingredients, they’re perfect for a satisfying snack or sweet breakfast.
14. Keto Strawberry Muffins
These keto strawberry muffins are soft, sweet, and perfect for a low-carb treat. Made with coconut flour and coconut milk, they’re gluten free, nut free, and easy to enjoy any time of day.
15. Lemon Strawberry Protein Muffins
These Lemon Strawberry Protein Muffins are a delicious, egg-free treat that keeps you full and satisfied. Packed with fruity sweetness and a boost of high protein, they’re perfect for a quick vegan protein breakfast.
16. Chocolate Chip Zucchini Muffins
These chocolate chip zucchini muffins are a delicious way to enjoy fresh summer zucchini. Moist, sweet, and packed with chocolate chips, they’re a quick treat anyone will love.
17. Keto Cranberry Muffins
These Keto Cranberry Muffins are a deliciously sweet treat that’s low carb, sugar free, and perfect for a quick breakfast or snack. Packed with tart cranberries and zesty orange flavor, they’re naturally gluten free and so easy to enjoy.
18. Healthy Banana and Pumpkin Muffins – Best Recipe
These healthy banana and pumpkin muffins are soft, sweet, and perfect for breakfast or a snack.
Made with simple ingredients and no refined sugar, they’re a kid-approved treat that’s easy to make and great for little ones.
19. Keto Lemon Muffins
These keto lemon muffins are a bright, zesty treat that’s moist, fluffy, and perfect for any time of day.
Made with simple ingredients and totally low carb, dairy free, gluten free, and sugar free, they’re a guilt-free way to enjoy a classic favorite.
20. Keto Carrot Cake Muffins
These Keto Carrot Cake Muffins are a delicious low carb treat made with almond flour and sweetened without sugar.
Each muffin is moist, flavorful, and only 2.4 net carbs—perfect for a guilt-free dessert any time of day.
21. Coconut Flour Muffins
These coconut flour muffins are a delicious, low carb treat that’s perfect for a quick breakfast on the go.
They’re dairy free, sugar free, and keto-friendly, making them a satisfying start to your morning.
22. Keto Apple Muffins
These keto apple muffins are a cozy fall favorite, packed with fresh apples and warm cinnamon. They’re gluten free, low carb, and sugar free—perfect for a tasty treat that fits your lifestyle.
23. Strawberry Almond Flour Muffins
These strawberry almond flour muffins are a sweet, satisfying treat that’s perfect for a quick breakfast or snack. Made with simple, wholesome ingredients, they’re fluffy, naturally sweet, and great for anyone enjoying low-carb or keto-friendly options.
24. Almond Flour Blackberry Muffins
These almond flour blackberry muffins are soft, sweet, and bursting with fresh berry goodness.
Perfect for a quick keto-friendly treat, they’re gluten free, dairy free, and only 3.9 net carbs per muffin.
25. Baked Oatmeal Muffins with Cranberries
These baked oatmeal muffins with cranberries are a delicious, no-fuss breakfast that’s sweet, satisfying, and made without refined sugar.
Perfectly soft, packed with fiber, and easy to grab on the go, they’re a must-try for anyone who loves simple, wholesome treats.
26. Vegan Banana Chocolate Chip Protein Muffins (with oat flour)
These Vegan Banana Chocolate Chip Protein Muffins with oat flour are a deliciously easy treat that’s as filling as it is tasty.
Packed with natural sweetness from ripe bananas and rich chocolate chips, they’re perfect for a grab-and-go breakfast or a satisfying snack.
27. Almond Flour Oatmeal Muffins
These Almond Flour Oatmeal Muffins are a simple, tasty way to start your day.
Perfectly soft and packed with flavor, they’re gluten free, dairy free, and low carb—great for any time of day.
28. Keto Raspberry Muffins
These Keto Raspberry Muffins are soft, sweet, and full of juicy raspberries—perfect for a low-carb treat. Made with simple ingredients and free from dairy and gluten, they’re a guilt-free snack any time of day.
